species:   Clros
pid:       PID1838
parent:    cro-mir-4
paralog:   
locus:     CADEHS020000005.2:590451-590536
matures:   ['UCAGCCUCGAGACUUUGCC', 'CAAAGUCUCGAGGCUAAG']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000005.2:590451-590536

181 out of bounds
4225 alignments
629 proper strand
543 stranded perfect matches

*******************                                              ******************** 
UCAGCCUCGAGACUUUGCCGGAUAGCUUUGUUUUCUUUACGGCGAAAAAGAAAAAGAAUAUAUCCUGCAAAGUCUCGAGGCUAAGC
..((((((((((((((((.(((((..(((.((((((((........)))))))).)))..))))).))))))))))))))))....
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=421 c
-------------------------------------------------------------------CAAAGUCUCGAGGCUAAG- l=18 a=0 c*
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=421 ma
-------------------------------------------------------------------CAAAGUCUCGAGGCUAAG- l=18 a=0 ma*

----------------------------------------------------------------------AGUCUCGAGGC----- l=11 a=1 
-----------------------------------------------------------------UGCAAAGUCUCGAGaC----- l=16 a=1 
-----------------------------------------------------------------UGCAAAGUCUCGAGGCUAA-- l=19 a=1 
-----------------------------------------------------------------UGCAAAGUCUCGAGGCUAAGC l=21 a=2 
----------------------------------------------------------------CUGCAAAGUCUCGAGGCUAAGC l=22 a=3 
----------------------------------------------------------UAUAUCCUGCAAAGUCUCG--------- l=19 a=1 
----------------------------------------------------------UAUAUCCUGCAAAGUCUCGA-------- l=20 a=1 
-----CUCGAGACUUUGC-------------------------------------------------------------------- l=13 a=1 
-----CUCGAGACUUUGCCGGAUAGCU----------------------------------------------------------- l=22 a=1 
-----CUCGAGACUUUGCCGGAUAGCUU---------------------------------------------------------- l=23 a=2 
-----CUCGAGACUUUGCCGGAUAGCUUUGUUUUCU-------------------------------------------------- l=31 a=1 
-CAGCCUCGAGACUUUGC-------------------------------------------------------------------- l=17 a=2 
-CAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=18 a=31 
-CAGCCUCGAGACUUUGCCG------------------------------------------------------------------ l=19 a=2 
UCAGCCUCGAGACUUUGC-------------------------------------------------------------------- l=18 a=66 
UuAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=79 
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=421 (c,ma)
UCAGCCUCGAGAuUUUGCC------------------------------------------------------------------- l=19 a=1 
UCAGCCUCGAGACUaUGCC------------------------------------------------------------------- l=19 a=1 
UCAGCCUCGAGACUcUGCC------------------------------------------------------------------- l=19 a=1 
UCAGCCUCGAGACUUUGCCG------------------------------------------------------------------ l=20 a=6 
UCAGCCUCGAGACUUUGCaG------------------------------------------------------------------ l=20 a=2 
UCAGCCUCGAGACUUUGCCGGA---------------------------------------------------------------- l=22 a=1 
UCAGCCUCGAGACUUUGCCGGAc--------------------------------------------------------------- l=23 a=1 

mb-01011
ax-1011001
ku-11
ss-101011011100
fn-101
